IL_8RW1_010

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8RW1|1|2|C|114, 8RW1|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_010 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.1116

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RW1|1|2|U|113
8RW1|1|2|C|114
8RW1|1|2|G|115
8RW1|1|2|U|116
*
8RW1|1|2|A|299
8RW1|1|2|A|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p