IL_8RW1_022

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8RW1|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_022 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.112

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8RW1|1|2|G|362
8RW1|1|2|G|363
8RW1|1|2|G|364
*
8RW1|1|2|C|375
8RW1|1|2|G|376
8RW1|1|2|A|377
8RW1|1|2|U|378
8RW1|1|2|U|379
8RW1|1|2|C|380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p