IL_8RW1_029

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_029 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1644

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8RW1|1|2|G|513
8RW1|1|2|A|514
8RW1|1|2|G|515
*
8RW1|1|2|C|535
8RW1|1|2|G|536
8RW1|1|2|A|537
8RW1|1|2|G|538
8RW1|1|2|G|539
8RW1|1|2|A|540
8RW1|1|2|A|541
8RW1|1|2|C|542

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30