IL_8RW1_035

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8RW1|1|2|A|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_035 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1308

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8RW1|1|2|G|615
8RW1|1|2|U|616
8RW1|1|2|U|617
8RW1|1|2|A|618
8RW1|1|2|A|619
8RW1|1|2|A|620
8RW1|1|2|A|621
*
8RW1|1|2|U|1103
8RW1|1|2|C|1104

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

KLLA0B11231p

Chain a

40S ribosomal protein S26