IL_8RW1_040

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

8RW1|1|2|C|709, 8RW1|1|2|C|731, 8RW1|1|2|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|G|703
8RW1|1|2|C|704
8RW1|1|2|U|705
8RW1|1|2|A|706
8RW1|1|2|A|707
8RW1|1|2|C|708
8RW1|1|2|C|709
8RW1|1|2|U|710
8RW1|1|2|G|711
8RW1|1|2|U|712
8RW1|1|2|A|713
*
8RW1|1|2|U|725
8RW1|1|2|G|726
8RW1|1|2|C|727
8RW1|1|2|A|728
8RW1|1|2|G|729
8RW1|1|2|G|730
8RW1|1|2|C|731
8RW1|1|2|G|732
8RW1|1|2|A|733
8RW1|1|2|A|734
8RW1|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

Small ribosomal subunit protein eS6