IL_8RW1_050

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8RW1|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_050 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1773

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8RW1|1|2|U|892
8RW1|1|2|U|893
8RW1|1|2|G|894
8RW1|1|2|U|895
8RW1|1|2|C|896
8RW1|1|2|A|897
8RW1|1|2|G|898
*
8RW1|1|2|C|909
8RW1|1|2|U|910
8RW1|1|2|U|911
8RW1|1|2|G|912
8RW1|1|2|G|913
8RW1|1|2|A|914
8RW1|1|2|U|915
8RW1|1|2|U|916
8RW1|1|2|U|917
8RW1|1|2|A|918

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11

Chain j

Eukaryotic translation initiation factor 2 subunit alpha