IL_8RW1_051

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGGGGAUCGAAG*CGUAGUCUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|A|982
8RW1|1|2|G|983
8RW1|1|2|G|984
8RW1|1|2|G|985
8RW1|1|2|G|986
8RW1|1|2|A|987
8RW1|1|2|U|988
8RW1|1|2|C|989
8RW1|1|2|G|990
8RW1|1|2|A|991
8RW1|1|2|A|992
8RW1|1|2|G|993
*
8RW1|1|2|C|1009
8RW1|1|2|G|1010
8RW1|1|2|U|1011
8RW1|1|2|A|1012
8RW1|1|2|G|1013
8RW1|1|2|U|1014
8RW1|1|2|C|1015
8RW1|1|2|U|1016
8RW1|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

KLLA0F18040p

Chain O

Small ribosomal subunit protein uS11

Chain a

40S ribosomal protein S26