IL_8RW1_054

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8RW1|1|2|U|1051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_054 not in the Motif Atlas

Geometric match to IL_8C3A_140

Geometric discrepancy: 0.339

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8RW1|1|2|G|1050
8RW1|1|2|U|1051
8RW1|1|2|G|1052
*
8RW1|1|2|C|1065
8RW1|1|2|C|1066

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain B

Small ribosomal subunit protein eS1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27