IL_8RW1_075

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGCU*GGUUG

Length

9 nucleotides

Bulged bases

8RW1|1|2|U|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_075 not in the Motif Atlas

Homologous match to IL_8P9A_446

Geometric discrepancy: 0.5079

The information below is about IL_8P9A_446

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|U|1352
8RW1|1|2|G|1353
8RW1|1|2|C|1354
8RW1|1|2|U|1355
*
8RW1|1|2|G|1366
8RW1|1|2|G|1367
8RW1|1|2|U|1368
8RW1|1|2|U|1369
8RW1|1|2|G|1370

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

KLLA0A07194p