IL_8RW1_080
3D structure
- PDB id
- 8RW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RW1_080 not in the Motif Atlas
- Homologous match to IL_8P9A_451
- Geometric discrepancy: 0.1792
- The information below is about IL_8P9A_451
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RW1|1|2|G|1538
8RW1|1|2|G|1539
8RW1|1|2|G|1540
8RW1|1|2|A|1541
8RW1|1|2|U|1542
8RW1|1|2|A|1543
*
8RW1|1|2|U|1564
8RW1|1|2|U|1565
8RW1|1|2|C|1566
8RW1|1|2|A|1567
8RW1|1|2|A|1568
8RW1|1|2|C|1569
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain Z
- 40S ribosomal protein S25
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