IL_8RW1_082

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

G(5MC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_082 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.1396

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8RW1|1|2|G|1636
8RW1|1|2|5MC|1637
8RW1|1|2|C|1638
8RW1|1|2|C|1639
*
8RW1|1|2|G|1758
8RW1|1|2|U|1759
8RW1|1|2|A|1760
8RW1|1|2|A|1761
8RW1|1|2|C|1762

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

mRNA (5'-R(P*AP*AP*U)-3')

Chain h

40S ribosomal protein L41-A

Chain i

Eukaryotic translation initiation factor 1A