IL_8RW1_086

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_086 not in the Motif Atlas

Homologous match to IL_8P9A_457

Geometric discrepancy: 0.2414

The information below is about IL_8P9A_457

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8RW1|1|2|C|1651
8RW1|1|2|G|1652
8RW1|1|2|A|1653
8RW1|1|2|U|1654
*
8RW1|1|2|A|1742
8RW1|1|2|G|1743
8RW1|1|2|A|1744
8RW1|1|2|G|1745

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

KLLA0B11231p

Chain h

40S ribosomal protein L41-A