IL_8S8D_039

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GUCC*GCGCAC

Length

10 nucleotides

Bulged bases

8S8D|1|2|G|672

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8D|1|2|G|655
8S8D|1|2|U|656
8S8D|1|2|C|657
8S8D|1|2|C|658
*
8S8D|1|2|G|670
8S8D|1|2|C|671
8S8D|1|2|G|672
8S8D|1|2|C|673
8S8D|1|2|A|674
8S8D|1|2|C|675

Current chains

Chain 2

18S ribosomal RNA

Nearby chains