IL_8S8D_040

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

8S8D|1|2|C|709, 8S8D|1|2|C|731, 8S8D|1|2|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8D|1|2|G|703
8S8D|1|2|C|704
8S8D|1|2|U|705
8S8D|1|2|A|706
8S8D|1|2|A|707
8S8D|1|2|C|708
8S8D|1|2|C|709
8S8D|1|2|U|710
8S8D|1|2|G|711
8S8D|1|2|U|712
8S8D|1|2|A|713
*
8S8D|1|2|U|725
8S8D|1|2|G|726
8S8D|1|2|C|727
8S8D|1|2|A|728
8S8D|1|2|G|729
8S8D|1|2|G|730
8S8D|1|2|C|731
8S8D|1|2|G|732
8S8D|1|2|A|733
8S8D|1|2|A|734
8S8D|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

Small ribosomal subunit protein eS6