IL_8S8D_045

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGGUUC*GGACCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8D|1|2|U|821
8S8D|1|2|G|822
8S8D|1|2|G|823
8S8D|1|2|U|824
8S8D|1|2|U|825
8S8D|1|2|C|826
*
8S8D|1|2|G|844
8S8D|1|2|G|845
8S8D|1|2|A|846
8S8D|1|2|C|847
8S8D|1|2|C|848
8S8D|1|2|A|849

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p