IL_8S8D_050
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8S8D|1|2|G|912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_050 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.1748
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8S8D|1|2|U|892
8S8D|1|2|U|893
8S8D|1|2|G|894
8S8D|1|2|U|895
8S8D|1|2|C|896
8S8D|1|2|A|897
8S8D|1|2|G|898
*
8S8D|1|2|C|909
8S8D|1|2|U|910
8S8D|1|2|U|911
8S8D|1|2|G|912
8S8D|1|2|G|913
8S8D|1|2|A|914
8S8D|1|2|U|915
8S8D|1|2|U|916
8S8D|1|2|U|917
8S8D|1|2|A|918
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- Small ribosomal subunit protein eS1
- Chain O
- Small ribosomal subunit protein uS11
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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