IL_8S8D_070
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CCG*CA(2MG)G
- Length
- 7 nucleotides
- Bulged bases
- 8S8D|1|2|A|1425
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_070 not in the Motif Atlas
- Geometric match to IL_4X4N_005
- Geometric discrepancy: 0.2021
- The information below is about IL_4X4N_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8S8D|1|2|C|1278
8S8D|1|2|C|1279
8S8D|1|2|G|1280
*
8S8D|1|2|C|1424
8S8D|1|2|A|1425
8S8D|1|2|2MG|1426
8S8D|1|2|G|1427
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- 40S ribosomal protein S3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain i
- Eukaryotic translation initiation factor 1A
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