IL_8S8D_080

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8D_080 not in the Motif Atlas

Homologous match to IL_8P9A_451

Geometric discrepancy: 0.1801

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8S8D|1|2|G|1538
8S8D|1|2|G|1539
8S8D|1|2|G|1540
8S8D|1|2|A|1541
8S8D|1|2|U|1542
8S8D|1|2|A|1543
*
8S8D|1|2|U|1564
8S8D|1|2|U|1565
8S8D|1|2|C|1566
8S8D|1|2|A|1567
8S8D|1|2|A|1568
8S8D|1|2|C|1569

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p

Chain Z

40S ribosomal protein S25