IL_8S8D_081
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8S8D|1|2|C|1635, 8S8D|1|2|A|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_081 not in the Motif Atlas
- Homologous match to IL_8C3A_470
- Geometric discrepancy: 0.1579
- The information below is about IL_8C3A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8S8D|1|2|C|1634
8S8D|1|2|C|1635
8S8D|1|2|G|1636
*
8S8D|1|2|C|1762
8S8D|1|2|A|1763
8S8D|1|2|A|1764
8S8D|1|2|G|1765
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
- Chain i
- Eukaryotic translation initiation factor 1A
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