IL_8S8E_038
3D structure
- PDB id
- 8S8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.85 Å
Loop
- Sequence
- GCUAACCUG*CAGGCGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8S8E|1|2|C|708, 8S8E|1|2|A|728, 8S8E|1|2|C|731, 8S8E|1|2|G|732
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8S8E|1|2|G|703
8S8E|1|2|C|704
8S8E|1|2|U|705
8S8E|1|2|A|706
8S8E|1|2|A|707
8S8E|1|2|C|708
8S8E|1|2|C|709
8S8E|1|2|U|710
8S8E|1|2|G|711
*
8S8E|1|2|C|727
8S8E|1|2|A|728
8S8E|1|2|G|729
8S8E|1|2|G|730
8S8E|1|2|C|731
8S8E|1|2|G|732
8S8E|1|2|A|733
8S8E|1|2|A|734
8S8E|1|2|C|735
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- Small ribosomal subunit protein eS6
Coloring options: