IL_8S8E_041
3D structure
- PDB id
- 8S8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.85 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8S8E|1|2|U|793, 8S8E|1|2|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8E_041 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.3721
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8S8E|1|2|G|751
8S8E|1|2|A|752
8S8E|1|2|A|753
8S8E|1|2|A|754
8S8E|1|2|A|755
8S8E|1|2|A|756
8S8E|1|2|A|757
8S8E|1|2|U|758
8S8E|1|2|U|759
*
8S8E|1|2|A|790
8S8E|1|2|U|791
8S8E|1|2|A|792
8S8E|1|2|U|793
8S8E|1|2|U|794
8S8E|1|2|A|795
8S8E|1|2|G|796
8S8E|1|2|C|797
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain J
- KLLA0E23673p
- Chain L
- KLLA0A10483p
- Chain W
- Small ribosomal subunit protein uS8
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