IL_8S8E_048

3D structure

PDB id

8S8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8S8E|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8E_048 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2009

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8S8E|1|2|U|892
8S8E|1|2|U|893
8S8E|1|2|G|894
8S8E|1|2|U|895
8S8E|1|2|C|896
8S8E|1|2|A|897
8S8E|1|2|G|898
*
8S8E|1|2|C|909
8S8E|1|2|U|910
8S8E|1|2|U|911
8S8E|1|2|G|912
8S8E|1|2|G|913
8S8E|1|2|A|914
8S8E|1|2|U|915
8S8E|1|2|U|916
8S8E|1|2|U|917
8S8E|1|2|A|918

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11

Chain j

Eukaryotic translation initiation factor 2 subunit alpha