IL_8S8F_036

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

CGUAGUU*AAUCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8F|1|2|C|626
8S8F|1|2|G|627
8S8F|1|2|U|628
8S8F|1|2|A|629
8S8F|1|2|G|630
8S8F|1|2|U|631
8S8F|1|2|U|632
*
8S8F|1|2|A|965
8S8F|1|2|A|966
8S8F|1|2|U|967
8S8F|1|2|C|968
8S8F|1|2|A|969
8S8F|1|2|A|970
8S8F|1|2|G|971

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8

Chain X

KLLA0B11231p