IL_8S8F_049

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

AGGGGAUCGAAG*CGUAGUCUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8F|1|2|A|982
8S8F|1|2|G|983
8S8F|1|2|G|984
8S8F|1|2|G|985
8S8F|1|2|G|986
8S8F|1|2|A|987
8S8F|1|2|U|988
8S8F|1|2|C|989
8S8F|1|2|G|990
8S8F|1|2|A|991
8S8F|1|2|A|992
8S8F|1|2|G|993
*
8S8F|1|2|C|1009
8S8F|1|2|G|1010
8S8F|1|2|U|1011
8S8F|1|2|A|1012
8S8F|1|2|G|1013
8S8F|1|2|U|1014
8S8F|1|2|C|1015
8S8F|1|2|U|1016
8S8F|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

KLLA0F18040p

Chain O

Small ribosomal subunit protein uS11

Chain a

40S ribosomal protein S26

Chain m

Eukaryotic translation initiation factor eIF-1