IL_8S8F_085
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8F_085 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.1273
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8S8F|1|2|U|1667
8S8F|1|2|G|1668
8S8F|1|2|A|1669
8S8F|1|2|G|1670
*
8S8F|1|2|C|1727
8S8F|1|2|A|1728
8S8F|1|2|A|1729
8S8F|1|2|A|1730
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- 40S ribosomal protein S8
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