IL_8S8F_089

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8F_089 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.389

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

8S8F|1|2|C|185
8S8F|1|2|G|186
8S8F|1|2|A|187
8S8F|1|2|C|188
*
8S8F|1|2|G|195
8S8F|1|2|A|196
8S8F|1|2|A|197
8S8F|1|2|G|198

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8