IL_8S8H_068
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8S8H|1|2|U|1430, 8S8H|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8H_068 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.215
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93811.1
- Basepair signature
- cWW-tHS-L-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8S8H|1|2|U|1275
8S8H|1|2|G|1276
8S8H|1|2|G|1277
*
8S8H|1|2|U|1428
8S8H|1|2|C|1429
8S8H|1|2|U|1430
8S8H|1|2|G|1431
8S8H|1|2|U|1432
8S8H|1|2|G|1433
8S8H|1|2|A|1434
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain D
- 40S ribosomal protein S3
- Chain K
- KLLA0B08173p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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