IL_8S8H_092

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8H_092 not in the Motif Atlas

Homologous match to IL_8CRE_401

Geometric discrepancy: 0.4776

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15043.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

4

Unit IDs

8S8H|1|2|U|149
8S8H|1|2|G|150
8S8H|1|2|U|151
8S8H|1|2|G|152
*
8S8H|1|2|U|160
8S8H|1|2|A|161
8S8H|1|2|G|162
8S8H|1|2|A|163

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24