IL_8S8H_096
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CG*CA(2MG)
- Length
- 5 nucleotides
- Bulged bases
- 8S8H|1|2|A|1425
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8H_096 not in the Motif Atlas
- Homologous match to IL_8CRE_455
- Geometric discrepancy: 0.2488
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 175
Unit IDs
8S8H|1|2|C|1279
8S8H|1|2|G|1280
*
8S8H|1|2|C|1424
8S8H|1|2|A|1425
8S8H|1|2|2MG|1426
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- 40S ribosomal protein S3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
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