IL_8S8J_009

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCGUUUA(PSU)UU*AUUCAAA

Length

17 nucleotides

Bulged bases

8S8J|1|2|C|114, 8S8J|1|2|G|115

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8J|1|2|U|113
8S8J|1|2|C|114
8S8J|1|2|G|115
8S8J|1|2|U|116
8S8J|1|2|U|117
8S8J|1|2|U|118
8S8J|1|2|A|119
8S8J|1|2|PSU|120
8S8J|1|2|U|121
8S8J|1|2|U|122
*
8S8J|1|2|A|294
8S8J|1|2|U|295
8S8J|1|2|U|296
8S8J|1|2|C|297
8S8J|1|2|A|298
8S8J|1|2|A|299
8S8J|1|2|A|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p