IL_8S8J_015

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8J_015 not in the Motif Atlas

Geometric match to IL_4V84_420

Geometric discrepancy: 0.2848

The information below is about IL_4V84_420

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8S8J|1|2|U|207
8S8J|1|2|U|208
8S8J|1|2|A|209
*
8S8J|1|2|U|254
8S8J|1|2|A|255

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p