IL_8S8J_019

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAUCAAC*GUUUCAACG

Length

16 nucleotides

Bulged bases

8S8J|1|2|U|312, 8S8J|1|2|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8J|1|2|U|310
8S8J|1|2|A|311
8S8J|1|2|U|312
8S8J|1|2|C|313
8S8J|1|2|A|314
8S8J|1|2|A|315
8S8J|1|2|C|316
*
8S8J|1|2|G|346
8S8J|1|2|U|347
8S8J|1|2|U|348
8S8J|1|2|U|349
8S8J|1|2|C|350
8S8J|1|2|A|351
8S8J|1|2|A|352
8S8J|1|2|C|353
8S8J|1|2|G|354

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain X

KLLA0B11231p