IL_8S8J_063

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GACA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8J_063 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3947

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

8S8J|1|2|G|1232
8S8J|1|2|A|1233
8S8J|1|2|C|1234
8S8J|1|2|A|1235
*
8S8J|1|2|U|1248
8S8J|1|2|U|1249
8S8J|1|2|U|1250
8S8J|1|2|C|1251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain M

40S ribosomal protein S12

Chain P

KLLA0F07843p

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31