IL_8S8K_006
3D structure
- PDB id
- 8S8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8K_006 not in the Motif Atlas
- Homologous match to IL_8P9A_378
- Geometric discrepancy: 0.1588
- The information below is about IL_8P9A_378
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.7
- Basepair signature
- cWW-cWH-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
8S8K|1|2|U|58
8S8K|1|2|C|59
8S8K|1|2|U|60
8S8K|1|2|A|61
8S8K|1|2|A|62
8S8K|1|2|G|63
*
8S8K|1|2|C|87
8S8K|1|2|U|88
8S8K|1|2|G|89
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- Small ribosomal subunit protein eS6
- Chain Y
- 40S ribosomal protein S24
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