IL_8S8K_039

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8K|1|2|G|703
8S8K|1|2|C|704
8S8K|1|2|U|705
8S8K|1|2|A|706
8S8K|1|2|A|707
8S8K|1|2|C|708
8S8K|1|2|C|709
8S8K|1|2|U|710
8S8K|1|2|G|711
8S8K|1|2|U|712
8S8K|1|2|A|713
*
8S8K|1|2|U|725
8S8K|1|2|G|726
8S8K|1|2|C|727
8S8K|1|2|A|728
8S8K|1|2|G|729
8S8K|1|2|G|730
8S8K|1|2|C|731
8S8K|1|2|G|732
8S8K|1|2|A|733
8S8K|1|2|A|734
8S8K|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

Small ribosomal subunit protein eS6