IL_8S8K_050

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGGAUCGAAG*CGUAGUCUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8K|1|2|A|982
8S8K|1|2|G|983
8S8K|1|2|G|984
8S8K|1|2|G|985
8S8K|1|2|G|986
8S8K|1|2|A|987
8S8K|1|2|U|988
8S8K|1|2|C|989
8S8K|1|2|G|990
8S8K|1|2|A|991
8S8K|1|2|A|992
8S8K|1|2|G|993
*
8S8K|1|2|C|1009
8S8K|1|2|G|1010
8S8K|1|2|U|1011
8S8K|1|2|A|1012
8S8K|1|2|G|1013
8S8K|1|2|U|1014
8S8K|1|2|C|1015
8S8K|1|2|U|1016
8S8K|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

KLLA0F18040p

Chain O

Small ribosomal subunit protein uS11

Chain a

40S ribosomal protein S26

Chain m

Eukaryotic translation initiation factor eIF-1