IL_8S8K_054

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8K|1|2|G|1110
8S8K|1|2|G|1111
8S8K|1|2|A|1112
8S8K|1|2|G|1113
8S8K|1|2|U|1114
8S8K|1|2|A|1115
8S8K|1|2|U|1116
8S8K|1|2|G|1117
8S8K|1|2|G|1118
*
8S8K|1|2|C|1127
8S8K|1|2|U|1128
8S8K|1|2|G|1129
8S8K|1|2|A|1130
8S8K|1|2|A|1131
8S8K|1|2|A|1132
8S8K|1|2|C|1133

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

KLLA0B11231p

Chain h

60S ribosomal protein L41-A