IL_8S8K_062

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

8S8K|1|2|G|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8K|1|2|A|1222
8S8K|1|2|A|1223
8S8K|1|2|U|1224
8S8K|1|2|A|1225
8S8K|1|2|A|1226
8S8K|1|2|G|1227
8S8K|1|2|G|1228
8S8K|1|2|A|1229
8S8K|1|2|U|1230
8S8K|1|2|U|1231
8S8K|1|2|G|1232
*
8S8K|1|2|C|1251
8S8K|1|2|U|1252
8S8K|1|2|U|1253
8S8K|1|2|G|1254
8S8K|1|2|A|1255
8S8K|1|2|U|1256
8S8K|1|2|U|1257
8S8K|1|2|U|1258
8S8K|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain M

40S ribosomal protein S12

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31