IL_8SCB_009

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

8SCB|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_009 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1259

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8SCB|1|5|A|121
8SCB|1|5|U|122
*
8SCB|1|5|A|147
8SCB|1|5|A|148
8SCB|1|5|A|149
8SCB|1|5|U|150
8SCB|1|5|G|151
8SCB|1|5|U|152

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15