IL_8SCB_054

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

8SCB|1|5|A|1650, 8SCB|1|5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SCB|1|5|C|1520
8SCB|1|5|C|1521
8SCB|1|5|OMG|1522
8SCB|1|5|A|1523
8SCB|1|5|A2M|1524
8SCB|1|5|A|1525
8SCB|1|5|G|1526
*
8SCB|1|5|C|1648
8SCB|1|5|U|1649
8SCB|1|5|A|1650
8SCB|1|5|G|1651
8SCB|1|5|U|1652
8SCB|1|5|A|1653
8SCB|1|5|G|1654
8SCB|1|5|C|1655
8SCB|1|5|U|1656
8SCB|1|5|G|1657

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

eL13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain j

Ribosomal protein L37