IL_8SCB_116

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_116 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3996

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8SCB|1|5|G|3710
8SCB|1|5|A|3711
8SCB|1|5|A|3712
8SCB|1|5|U|3713
8SCB|1|5|G|3714
*
8SCB|1|5|C|3739
8SCB|1|5|G|3740
8SCB|1|5|C|3741

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8