IL_8SCB_125

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(OMU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_125 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1349

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8SCB|1|5|C|3924
8SCB|1|5|OMU|3925
8SCB|1|5|C|3926
*
8SCB|1|5|G|4185
8SCB|1|5|A|4186
8SCB|1|5|G|4187

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain o

eL42