IL_8SCB_144

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8SCB|1|5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_144 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3889

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8SCB|1|5|U|4468
8SCB|1|5|U|4469
8SCB|1|5|G|4470
*
8SCB|1|5|C|4485
8SCB|1|5|C|4486
8SCB|1|5|A|4487
8SCB|1|5|A|4488
8SCB|1|5|G|4489

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1