IL_8SCB_160

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_160 not in the Motif Atlas

Geometric match to IL_361D_001

Geometric discrepancy: 0.3126

The information below is about IL_361D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8SCB|1|5|G|4743
8SCB|1|5|A|4744
8SCB|1|5|G|4745
8SCB|1|5|C|4746
*
8SCB|1|5|G|4954
8SCB|1|5|A|4955
8SCB|1|5|A|4956
8SCB|1|5|C|4957

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain f

eL33