IL_8SCB_173

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

8SCB|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_173 not in the Motif Atlas

Geometric match to IL_6ZDP_001

Geometric discrepancy: 0.3399

The information below is about IL_6ZDP_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8SCB|1|5|G|5012
8SCB|1|5|C|5013
8SCB|1|5|A|5014
*
8SCB|1|5|U|5035
8SCB|1|5|C|5036

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain W

60S ribosomal protein L24