IL_8SCB_196

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_196 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1666

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8SCB|1|9|C|188
8SCB|1|9|U|189
8SCB|1|9|G|190
8SCB|1|9|A|191
8SCB|1|9|C|192
*
8SCB|1|9|G|207
8SCB|1|9|G|208
8SCB|1|9|A|209
8SCB|1|9|U|210
8SCB|1|9|G|211

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain II

eS8