IL_8SCB_206

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

8SCB|1|9|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_206 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2835

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8SCB|1|9|U|495
8SCB|1|9|C|496
*
8SCB|1|9|G|506
8SCB|1|9|G|507
8SCB|1|9|A|508

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

uS4

Chain YY

40S ribosomal protein S24