IL_8SCB_209

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_209 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1864

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8SCB|1|9|G|563
8SCB|1|9|A|564
8SCB|1|9|G|565
*
8SCB|1|9|C|585
8SCB|1|9|G|586
8SCB|1|9|A|587
8SCB|1|9|G|588
8SCB|1|9|G|589
8SCB|1|9|A|590
8SCB|1|9|U|591
8SCB|1|9|C|592

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30