IL_8SCB_224

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCGC*GAG

Length

7 nucleotides

Bulged bases

8SCB|1|9|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_224 not in the Motif Atlas

Geometric match to IL_4LFB_059

Geometric discrepancy: 0.3119

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8SCB|1|9|C|876
8SCB|1|9|C|877
8SCB|1|9|G|878
8SCB|1|9|C|879
*
8SCB|1|9|G|907
8SCB|1|9|A|908
8SCB|1|9|G|909

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain R

Ribosomal protein L19