IL_8SCB_237

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_237 not in the Motif Atlas

Geometric match to IL_1MFQ_003

Geometric discrepancy: 0.236

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8SCB|1|9|U|1101
8SCB|1|9|G|1102
8SCB|1|9|C|1103
*
8SCB|1|9|G|1129
8SCB|1|9|G|1130
8SCB|1|9|G|1131

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain aa

40S ribosomal protein S26

Chain bb

eS27